Author Topic: Specifying Unanalyzed Elements For a Proper Matrix Correction  (Read 31827 times)

John Donovan

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Re: Specifying Unanalyzed Elements For a Proper Matrix Correction
« Reply #105 on: August 19, 2019, 04:13:36 PM »
OK, now on to Probe for EPMA.   We think the implementation of the ferrous/ferric calculation (from Droop, 1987) is pretty good, but please download the latest version (12.7.1) and let us know what you think.  The CalcZAF implementation is described here:

https://probesoftware.com/smf/index.php?topic=691.msg8592#msg8592

So let's take an example of hematite. Calculating all iron as FeO we get these results:

Un    3 Hematite, Results in Elemental Weight Percents

ELEM:       Fe       O
TYPE:     ANAL    CALC
BGDS:      LIN
TIME:    10.00     ---
BEAM:    30.00     ---

ELEM:       Fe       O   SUM
    29  68.992  19.766  88.758
    30  69.126  19.805  88.931
    31  68.758  19.699  88.457

AVER:   68.959  19.757  88.715
SDEV:     .186    .053    .240
SERR:     .108    .031
%RSD:      .27     .27
STDS:       39     ---

STKF:    .6810     ---
STCT:   228.06     ---

UNKF:    .6566     ---
UNCT:   219.89     ---
UNBG:      .48     ---

ZCOR:   1.0503     ---
KRAW:    .9642     ---
PKBG:   456.58     ---

Un    3 Hematite, Results in Oxide Weight Percents

ELEM:      FeO       O   SUM
    29  88.758    .000  88.758
    30  88.931    .000  88.931
    31  88.457    .000  88.457

AVER:   88.715    .000  88.715
SDEV:     .240    .000    .240
SERR:     .138    .000
%RSD:      .27  -91.65
STDS:       39     ---

Note the low totals (~88%) due to the missing ferric oxygen.  Now we specify the ferrous/ferric calculation and the mineral cations and oxygen (2 and 3 respectively for hematites) as seen here:



and re-calculating we now obtain these results:

Un    3 Hematite, Results in Elemental Weight Percents
 
ELEM:       Fe       O
TYPE:     ANAL    CALC
BGDS:      LIN
TIME:    10.00     ---
BEAM:    30.00     ---

ELEM:       Fe       O   SUM
    29  70.168  30.155 100.323
    30  70.305  30.213 100.518
    31  69.930  30.052  99.982

AVER:   70.134  30.140 100.274
SDEV:     .190    .081    .271
SERR:     .109    .047
%RSD:      .27     .27
STDS:       39     ---

STKF:    .6810     ---
STCT:   228.06     ---

UNKF:    .6566     ---
UNCT:   219.89     ---
UNBG:      .48     ---

ZCOR:   1.0682     ---
KRAW:    .9642     ---
PKBG:   456.58     ---

Ferrous/Ferric Calculation Results:
        Ferric/TotalFe   FeO        Fe2O3    Oxygen from Fe2O3
    29       1.000        .000     100.323      10.052
    30       1.000        .000     100.518      10.071
    31       1.000        .000      99.982      10.017

AVER:        1.000        .000     100.274      10.047

Un    3 Hematite, Results in Oxide Weight Percents

ELEM:      FeO       O   SUM
    29  90.271  10.052 100.323
    30  90.447  10.071 100.518
    31  89.965  10.017  99.982

AVER:   90.228  10.047 100.274
SDEV:     .244    .027    .271
SERR:     .141    .016
%RSD:      .27     .27
STDS:       39     ---

Our totals are now much better but because we included this excess oxygen in the matrix correction as suggested by Brian Joy, even more impressive is that our Fe went from 68.959 to 70.134 wt%!

We also added this ferrous/ferric output to the User Specified Output options as seen here:



so now these results can be output to Excel as usual:

« Last Edit: August 19, 2019, 05:56:38 PM by John Donovan »
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Probeman

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Re: Specifying Unanalyzed Elements For a Proper Matrix Correction
« Reply #106 on: September 11, 2019, 02:38:22 PM »
Here's a "real world" example of a titanium magnetite with the ferrous/ferric excess oxygen calculation in Probe for EPMA using the method of Droop (1987) to calculate the excess oxygen from ferric iron. This excess oxygen is then added into the matrix correction for improved accuracy. The output below also includes oxides and sum of cations also as specified in the Calculation Options dialog.

Un   30 8400 Mgt Trav In-Out
TakeOff = 40.0  KiloVolt = 15.0  Beam Current = 50.0  Beam Size =    0
(Magnification (analytical) =  20000),        Beam Mode = Analog  Spot
(Magnification (default) =     1000, Magnification (imaging) =    100)
Image Shift (X,Y):                                       -2.00,   3.00

Formula Based on Sum of Cations = 3.00   Oxygen Calc. by Stoichiometry
Number of Data Lines:   6             Number of 'Good' Data Lines:   6
First/Last Date-Time: 07/23/2019 02:12:20 PM to 07/23/2019 02:29:56 PM

Average Total Oxygen:       28.684     Average Total Weight%:  100.294
Average Calculated Oxygen:  28.684     Average Atomic Number:   20.135
Average Excess Oxygen:        .000     Average Atomic Weight:   31.696
Average ZAF Iteration:        3.00     Average Quant Iterate:     4.00

Oxygen Calculated by Cation Stoichiometry and Included in the Matrix Correction
Excess Oxygen From Ferric Iron Calculated and Included in the Matrix Correction
Charge Balance Method of Droop (1987), Total Cations= 3.00, Total Oxygens= 4.00

Un   30 8400 Mgt Trav In-Out, Results in Elemental Weight Percents
 
ELEM:       Fe      Mg      Si      Ti       V      Mn      Cr      Al       O
TYPE:     ANAL    ANAL    ANAL    ANAL    ANAL    ANAL    ANAL    ANAL    CALC
BGDS:      MAN     MAN     MAN     MAN     LIN     LIN     MAN     MAN
TIME:    40.00  140.00   40.00   80.00   30.00   30.00   88.00  141.00     ---
BEAM:    50.32   50.32   50.32   50.32   50.32   50.32   50.32   50.32     ---

ELEM:       Fe      Mg      Si      Ti       V      Mn      Cr      Al       O   SUM 
    72  60.751   1.862    .019   6.903    .309    .403    .054   1.270  28.664 100.234
    73  60.644   1.863    .075   6.872    .333    .407    .059   1.258  28.657 100.170
    74  60.946   1.871    .021   6.884    .295    .405    .056   1.255  28.732 100.464
    75  60.505   1.856    .028   6.918    .323    .420    .056   1.260  28.584  99.950
    76  60.954   1.876    .016   6.951    .335    .422    .043   1.251  28.776 100.623
    77  60.805   1.858    .023   6.949    .301    .404    .044   1.249  28.693 100.325

AVER:   60.768   1.864    .030   6.913    .316    .410    .052   1.257  28.684 100.294
SDEV:     .175    .008    .022    .032    .017    .008    .007    .008    .066    .235
SERR:     .071    .003    .009    .013    .007    .003    .003    .003    .027
%RSD:      .29     .41   73.90     .47    5.40    2.06   12.65     .61     .23
STDS:      395      12      14      22      23      25      24     396     ---

STKF:    .6779   .4736   .4101   .5547   .6328   .7341   .6400   .0469     ---
STCT:   6812.2 53482.2  7089.5 14540.1 13304.5 22081.3  4697.4  3264.8     ---

UNKF:    .5649   .0085   .0002   .0703   .0033   .0038   .0006   .0072     ---
UNCT:   5676.3   964.8     3.7  1841.7    69.6   114.7     4.3   503.0     ---
UNBG:     20.5    79.1     5.5    52.0    25.2    49.5     9.6    48.0     ---

ZCOR:   1.0758  2.1821  1.4034   .9839   .9547  1.0761   .8885  1.7401     ---
KRAW:    .8333   .0180   .0005   .1267   .0052   .0052   .0009   .1541     ---
PKBG:   277.35   13.19    1.68   36.42    3.77    3.32    1.45   11.48     ---
INT%:      .00    ----    ----    ----  -17.39    -.03  -10.90     .00     ---

Ferrous/Ferric Calculation Results:
        Ferric/TotalFe   FeO        Fe2O3    Oxygen from Fe2O3 
    72        .458      42.390      39.749       3.983
    73        .455      42.482      39.494       3.957
    74        .460      42.324      40.100       4.018
    75        .456      42.333      39.459       3.954
    76        .458      42.468      39.953       4.003
    77        .458      42.388      39.828       3.990

AVER:         .458      42.397      39.764       3.984

Un   30 8400 Mgt Trav In-Out, Results in Oxide Weight Percents

ELEM:      FeO     MgO    SiO2    TiO2    V2O3     MnO   Cr2O3   Al2O3       O   SUM 
    72  78.156   3.087    .041  11.515    .454    .520    .079   2.400   3.983 100.234
    73  78.019   3.090    .161  11.464    .491    .526    .086   2.377   3.957 100.170
    74  78.407   3.103    .044  11.484    .433    .523    .081   2.371   4.018 100.464
    75  77.839   3.078    .059  11.539    .476    .542    .082   2.382   3.954  99.950
    76  78.418   3.110    .034  11.594    .492    .545    .063   2.363   4.003 100.623
    77  78.225   3.080    .050  11.591    .442    .522    .065   2.359   3.990 100.325

AVER:   78.177   3.091    .065  11.531    .465    .530    .076   2.375   3.984 100.294
SDEV:     .225    .013    .048    .054    .025    .011    .010    .015    .025    .235
SERR:     .092    .005    .020    .022    .010    .004    .004    .006    .010
%RSD:      .29     .41   73.90     .47    5.40    2.06   12.65     .61     .64
STDS:      395      12      14      22      23      25      24     396     ---

Un   30 8400 Mgt Trav In-Out, Results Based on Sum of 3 Cations

ELEM:       Fe      Mg      Si      Ti       V      Mn      Cr      Al       O   SUM 
    72   2.381    .168    .001    .315    .013    .016    .002    .103   3.921   6.921
    73   2.377    .168    .006    .314    .014    .016    .002    .102   3.921   6.921
    74   2.384    .168    .002    .314    .013    .016    .002    .102   3.922   6.922
    75   2.378    .168    .002    .317    .014    .017    .002    .103   3.921   6.921
    76   2.380    .168    .001    .316    .014    .017    .002    .101   3.922   6.922
    77   2.382    .167    .002    .317    .013    .016    .002    .101   3.923   6.923

AVER:    2.380    .168    .002    .316    .014    .016    .002    .102   3.922   6.922
SDEV:     .002    .000    .002    .001    .001    .000    .000    .001    .001    .001
SERR:     .001    .000    .001    .001    .000    .000    .000    .000    .000
%RSD:      .10     .24   73.96     .46    5.41    2.06   12.76     .74     .02

Note that if we did *not* include the calculation of excess oxygen in the matrix correction our oxides and formula would look like this:

Un   30 8400 Mgt Trav In-Out, Results in Oxide Weight Percents

ELEM:      FeO     MgO    SiO2    TiO2    V2O3     MnO   Cr2O3   Al2O3       O   SUM 
    72  77.687   3.107    .037  11.434    .451    .517    .074   2.412    .000  95.718
    73  77.554   3.109    .158  11.383    .487    .523    .080   2.388    .000  95.684
    74  77.933   3.123    .041  11.402    .430    .520    .076   2.383    .000  95.908
    75  77.374   3.098    .056  11.458    .472    .539    .076   2.393    .000  95.467
    76  77.946   3.130    .031  11.512    .489    .542    .058   2.375    .000  96.083
    77  77.755   3.100    .047  11.509    .439    .519    .059   2.371    .000  95.799

AVER:   77.708   3.111    .062  11.450    .461    .527    .071   2.387    .000  95.776
SDEV:     .221    .013    .048    .054    .025    .011    .010    .015    .000    .210
SERR:     .090    .005    .020    .022    .010    .004    .004    .006    .000
%RSD:      .28     .41   78.00     .47    5.41    2.06   13.52     .61 -167.33
STDS:      395      12      14      22      23      25      24     396     ---

Un   30 8400 Mgt Trav In-Out, Results Based on Sum of 3 Cations

ELEM:       Fe      Mg      Si      Ti       V      Mn      Cr      Al       O   SUM 
    72   2.379    .170    .001    .315    .013    .016    .002    .104   3.376   6.376
    73   2.375    .170    .006    .313    .014    .016    .002    .103   3.379   6.379
    74   2.382    .170    .002    .313    .013    .016    .002    .103   3.374   6.374
    75   2.376    .170    .002    .316    .014    .017    .002    .104   3.378   6.378
    76   2.378    .170    .001    .316    .014    .017    .002    .102   3.376   6.376
    77   2.380    .169    .002    .317    .013    .016    .002    .102   3.377   6.377

AVER:    2.378    .170    .002    .315    .014    .016    .002    .103   3.377   6.377
SDEV:     .002    .000    .002    .001    .001    .000    .000    .001    .002    .002
SERR:     .001    .000    .001    .001    .000    .000    .000    .000    .001
%RSD:      .10     .24   78.05     .46    5.41    2.06   13.63     .74     .06

Of course the oxygen formula is low, but note the effect of this "missing oxygen" on the concentrations of the other elements. E.g., without the excess oxygen in the matrix correction, the Fe and Ti concentrations went down, but the Mg and Al concentrations went up!
« Last Edit: September 11, 2019, 03:26:57 PM by Probeman »
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Probeman

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Re: Specifying Unanalyzed Elements For a Proper Matrix Correction
« Reply #107 on: February 10, 2020, 10:14:23 PM »
Mike Dungan, Andrew Locock and I fixed a problem with some oxide compositions in the ferric/ferric excess oxygen calculation as seen here:

Ferrous/Ferric Calculation Results:
        Ferric/TotalFe   FeO        Fe2O3    Oxygen from Fe2O3 
    37        .387      44.824      31.498       3.156
    38        .387      44.633      31.339       3.140

AVER:         .387      44.729      31.419       3.148

Un    6 CH-19_Ox99_Mgt Core-1, Results in Oxide Weight Percents

ELEM:      FeO     MgO    TiO2    V2O3     MnO   Cr2O3   Al2O3    SiO2     CaO       O   SUM 
    37  73.166   2.152  18.583    .543    .586    .006   1.835    .053    .014   3.156 100.093
    38  72.832   2.159  18.500    .553    .574    .002   1.906    .043    .014   3.140  99.723

AVER:   72.999   2.156  18.541    .548    .580    .004   1.870    .048    .014   3.148  99.908
SDEV:     .236    .005    .059    .008    .008    .003    .051    .007    .000    .011    .261
SERR:     .167    .003    .042    .005    .006    .002    .036    .005    .000    .008
%RSD:      .32     .23     .32    1.39    1.45   69.25    2.70   14.77    1.72     .36
STDS:      395      12      22      23      25      24     306      14     306     ---

Un    6 CH-19_Ox99_Mgt Core-1, Results Based on Sum of 3 Cations

ELEM:       Fe      Mg      Ti       V      Mn      Cr      Al      Si      Ca       O   SUM 
    37   2.251    .118    .514    .016    .018    .000    .080    .002    .001   4.000   7.000
    38   2.248    .119    .514    .016    .018    .000    .083    .002    .001   4.000   7.000

AVER:    2.250    .118    .514    .016    .018    .000    .081    .002    .001   4.000   7.000
SDEV:     .002    .001    .000    .000    .000    .000    .002    .000    .000    .000    .000
SERR:     .002    .000    .000    .000    .000    .000    .002    .000    .000    .000
%RSD:      .10     .46     .09    1.62    1.22   69.07    2.93   14.55    1.49     .00

This change now properly handles oxides such as Al2O3, V2O3, Cr2O3, etc. You can update PFE anytime.
« Last Edit: February 11, 2020, 07:32:25 AM by Probeman »
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Re: Specifying Unanalyzed Elements For a Proper Matrix Correction
« Reply #108 on: June 29, 2020, 09:34:18 AM »
We've recently been working with Julien Allaz to fix the way in which the oxygen-halogen correction is applied to standards in Probe for EPMA as first reported by Ben Wade:

https://probesoftware.com/smf/index.php?topic=1247.msg9305#msg9305

During that time we realized that these recent halogen correction issues for standards (when oxygen is calculated by stoichiometry rather than a fixed concentration), are somewhat similar to the excess oxygen calculation using the Droop method of charge balance (hey- it's all about charge balance!). Again only for standard samples, when oxygen is calculated by stoichiometry (as opposed to added by fixed concentration from the standard database).

Previously, for the excess oxygen from ferric iron calculation, we simply did not allow one to perform this excess oxygen calculation for standards (only for unknown samples). But we realized yesterday that it's the same issue in that a double correction is applied for standards if the excess (or deficit) oxygen is already included in the standard database, and the excess (or deficit) oxygen correction for ferric oxygen (or halogen equivalence) is applied in Probe for EPMA, *and* the oxygen in the standard is calculated by stocihiometry.  Whew!

So what we did was enable the calculation of excess oxygen for standards (just as we have had for the halogen correction), so if the standard analysis is using the default fixed oxygen concentration from the standard database, all is well.  This can be seen is this output:

Excess Oxygen From Ferric Iron was not Included in the Matrix Correction (because oxygen was not calculated by cation stoichiometry)

St  395 Set   1 Magnetite U.C. #3380, Results in Elemental Weight Percents
 
ELEM:        F      Fe      Al      Mg      Mn       O
TYPE:     ANAL    ANAL    SPEC    SPEC    SPEC    SPEC
BGDS:      LIN     LIN
TIME:    20.00   20.00     ---     ---     ---     ---
BEAM:    29.98   29.98     ---     ---     ---     ---

ELEM:        F      Fe      Al      Mg      Mn       O   SUM 
    10    .051  71.844    .201    .072    .054  27.803 100.025
    11    .073  72.195    .201    .072    .054  27.803 100.398
    12    .026  72.209    .201    .072    .054  27.803 100.365

AVER:     .050  72.083    .201    .072    .054  27.803 100.263
SDEV:     .023    .207    .000    .000    .000    .000    .207
SERR:     .014    .119    .000    .000    .000    .000
%RSD:    46.70     .29     .00     .00     .00     .00

PUBL:     n.a.  72.080    .201    .072    .054  27.803 100.210
%VAR:      ---   (.00)     .00     .00     .00     .00
DIFF:      ---   (.00)    .000    .000    .000    .000
STDS:      835     395     ---     ---     ---     ---

STKF:    .1715   .6779     ---     ---     ---     ---
STCT:    57.18  228.22     ---     ---     ---     ---

UNKF:    .0002   .6779     ---     ---     ---     ---
UNCT:      .07  228.22     ---     ---     ---     ---
UNBG:      .32     .49     ---     ---     ---     ---

ZCOR:   2.2854  1.0633     ---     ---     ---     ---
KRAW:    .0013  1.0000     ---     ---     ---     ---
PKBG:     1.23  466.16     ---     ---     ---     ---

Ferrous/Ferric Calculation Results:
        Ferric/TotalFe   FeO        Fe2O3    Oxygen from Fe2O3 
    10        .000        .000        .000        .000
    11        .000        .000        .000        .000
    12        .000        .000        .000        .000

AVER:         .000        .000        .000        .000

But in the case where the user changes the standard analysis calculation to calculate oxygen by stoichiometry, the program will now zero out the excess oxygen (just as it now does for the deficit oxygen from halogens), and not perform a double correction as seen here:

Oxygen Calculated by Cation Stoichiometry and Included in the Matrix Correction
Oxygen Equivalent from Halogens (F/Cl/Br/I) was Subtracted in the Matrix Correction
Excess Oxygen From Ferric Iron Calculated and Included in the Matrix Correction
Charge Balance Method of Droop (1987), Total Cations= 3.00, Total Oxygens= 4.00

St  395 Set   1 Magnetite U.C. #3380, Results in Elemental Weight Percents
 
ELEM:        F      Fe      Al      Mg      Mn       O
TYPE:     ANAL    ANAL    SPEC    SPEC    SPEC    CALC
BGDS:      LIN     LIN
TIME:    20.00   20.00     ---     ---     ---     ---
BEAM:    29.98   29.98     ---     ---     ---     ---

ELEM:        F      Fe      Al      Mg      Mn       O   SUM 
    10    .051  71.838    .201    .072    .054  27.742  99.957
    11    .073  72.206    .201    .072    .054  27.908 100.514
    12    .026  72.215    .201    .072    .054  27.859 100.427

AVER:     .050  72.086    .201    .072    .054  27.836 100.299
SDEV:     .023    .215    .000    .000    .000    .085    .300
SERR:     .014    .124    .000    .000    .000    .049
%RSD:    46.75     .30     .00     .00     .00     .31

PUBL:     n.a.  72.080    .201    .072    .054  27.803 100.210
%VAR:      ---   (.01)     .00     .00     .00     .12
DIFF:      ---   (.01)    .000    .000    .000    .033
STDS:      835     395     ---     ---     ---     ---

STKF:    .1715   .6779     ---     ---     ---     ---
STCT:    57.18  228.22     ---     ---     ---     ---

UNKF:    .0002   .6779     ---     ---     ---     ---
UNCT:      .07  228.22     ---     ---     ---     ---
UNBG:      .32     .49     ---     ---     ---     ---

ZCOR:   2.2865  1.0633     ---     ---     ---     ---
KRAW:    .0013  1.0000     ---     ---     ---     ---
PKBG:     1.23  466.16     ---     ---     ---     ---

Ferrous/Ferric Calculation Results:
        Ferric/TotalFe   FeO        Fe2O3    Oxygen from Fe2O3 
    10        .674      30.092      69.266       6.940
    11        .678      29.937      69.966       7.010
    12        .671      30.591      69.252       6.938

AVER:         .674      30.207      69.495       6.963


So now, the code for dealing with this is seen here:

Code: [Select]
If sample(1).Type% = 1 Then
analysis.WtPercents!(chan%) = ConvertTotalToExcessOxygen!(Int(1), sample(), stdsample())
If UseOxygenFromHalogensCorrectionFlag And sample(1).OxideOrElemental% = 1 Then
If analysis.WtPercents!(chan%) < 0# Then analysis.WtPercents!(chan%) = 0#  ' zero out oxygen deficit from standard database
End If
If sample(1).FerrousFerricCalculationFlag And sample(1).OxideOrElemental% = 1 Then
If analysis.WtPercents!(chan%) > 0# Then analysis.WtPercents!(chan%) = 0#  ' zero out oxygen excess from standard database
End If

' For unknowns, use specified oxygen weight percent
Else
analysis.WtPercents!(chan%) = stdsample(1).ElmPercents!(ip%)
End If

One possible remaining issue is when one has both halogens and ferric iron present in a standard, and one tries to calculate oxygen by stoichiometry, the excess/deficit oxygen might not be handled perfectly. In this case, we would just say, simply use the default to calculate oxygen elementally (fixed concentration from the standard database) and all will be well.  But I think it will work, because if both the oxygen-halogen correction *and* the ferric iron calculation correction are turned on, you'll get a zero value for excess/deficit oxygen, so it should all work.

Remember, in all cases, the calculations for unknown samples are handled just fine. This is all pretty complicated we know, but please ask us any questions you may have.

In the meantime, update Probe for EPMA from the Help menu and these options are all available now.
« Last Edit: June 29, 2020, 10:08:29 PM by John Donovan »
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John Donovan

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Re: Specifying Unanalyzed Elements For a Proper Matrix Correction
« Reply #109 on: August 27, 2021, 08:19:43 AM »
Recently Andrew Locock found a mineral calculation for an unanalyzed elements situation which did not properly apply the oxygen-halogen correction when calculating oxygen by stoichiometry (that is, when not measuring oxygen, or specifying oxygen as a fixed concentration).  The following examples were all measured by Andrew on one of his microprobe instruments (yes he has two of them!).

I should also mention that a full paper on the effects of unanalyzed elements in EPMA analysis is being prepared with Aurelien Moy as first author (and Andrew and myself and several others) that will be submitted later this year for publication.

As a quick review of the unanalyzed element problem can be seen is this carbonate example where oxygen is calculated by stoichiometry and carbon is calculated relative to stoichiometric oxygen in the ratio of 0.333 atoms of carbon to one atom of oxygen:



One can click on the images to see them better, though I'm not quite sure why he specified 0.33368 atoms of carbon in this example...

Another slightly more complicated example is that of tourmaline where 0.129 atoms of hydrogen are calculated relative to stoichiometric oxygen *and* 0.5 atoms of boron are calculated relative to silicon:



Now as for the halogen-oxygen correction, this is applied when oxygen is calculated by stoichiometry and a halogen element (chlorine, fluorine, etc.) is also present and replacing some of the stoichiometric oxygen. In these cases, unless a correction is applied to the stoichiometric oxygen concentration, too much oxygen will be included in the EPMA matrix iteration and the correction of the other elements will be calculated incorrectly.

For chlorine measurements the effect of this excess oxygen is fairly small, but for fluorine, which is heavily absorbed by oxygen, the effect is much larger. There is a separate topic devoted to this topic here, if anyone wants to learn more about these details:

https://probesoftware.com/smf/index.php?topic=1247.0

So back to Andrew's observations. What Andrew found is that when he was *not* measuring fluorine and was calculating oxygen by stoichiometry in some topaz minerals, the halogen-oxygen correction was being applied correctly as seen here:



That is, when the unanalyzed fluorine is calculated by stoichiometry to stoichiometric oxygen.

However, he found that when he tried to calculate the fluorine by stoichiometry to aluminum (aluminium to some!), the program did not apply the halogen-oxygen correction as expected. This was because it turned out that the element relative to another element code was located *after* the oxygen by stoichiometry code in the matrix iteration.  When we moved the element relative to another element code to *before* the oxygen by stoichiometry code, it all worked as seen here:



 8)

Any questions? 
John J. Donovan, Pres. 
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Probeman

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Re: Specifying Unanalyzed Elements For a Proper Matrix Correction
« Reply #110 on: August 27, 2021, 09:55:31 AM »
I have a question: is it an "oxygen-halogen" correction, or a "halogen-oxygen" correction?   :D
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Re: Specifying Unanalyzed Elements For a Proper Matrix Correction
« Reply #111 on: August 27, 2021, 10:21:42 AM »
I have a question: is it an "oxygen-halogen" correction, or a "halogen-oxygen" correction?   :D

"Oxygen equivalent of fluorine" is how it was put by Deer, Howie and Zussman in the Appendix of their book
An Introduction to the Rock-Forming Minerals.

So, more broadly, the oxygen equivalent of the halogen content.

Sorry about the typo in the carbonate example above.
Andrew

John Donovan

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Re: Specifying Unanalyzed Elements For a Proper Matrix Correction
« Reply #112 on: August 27, 2021, 12:02:57 PM »
I have a question: is it an "oxygen-halogen" correction, or a "halogen-oxygen" correction?   :D

"Oxygen equivalent of fluorine" is how it was put by Deer, Howie and Zussman in the Appendix of their book
An Introduction to the Rock-Forming Minerals.

So, more broadly, the oxygen equivalent of the halogen content.

Sorry about the typo in the carbonate example above.
Andrew

OK, then I'm going to use "oxygen-halogen" correction, because I can't usually spell "equivalent" or "equivalence"!    ;D
« Last Edit: August 27, 2021, 12:44:20 PM by John Donovan »
John J. Donovan, Pres. 
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Re: Specifying Unanalyzed Elements For a Proper Matrix Correction
« Reply #113 on: August 29, 2021, 09:32:15 AM »
I think it's worth demonstrating in some detail exactly how important it is to include these unanalyzed elements in the matrix correction. For example here are the quant results for the above topaz example (data from Locock) with fluorine not included in the matrix iteration:

Un    2 Topaz, Results in Elemental Weight Percents
 
ELEM:       Al      Si       F       O
TYPE:     ANAL    ANAL    SPEC    CALC
BGDS:      LIN     LIN
TIME:    20.00   20.00     ---     ---
BEAM:    15.18   15.18     ---     ---

ELEM:       Al      Si       F       O   SUM 
     6  28.266  15.337    .000  42.617  86.220
     7  28.270  15.327    .000  42.608  86.205
     8  28.137  15.383    .000  42.555  86.075
     9  28.351  15.455    .000  42.827  86.634
    10  28.221  15.368    .000  42.611  86.200

AVER:   28.249  15.374    .000  42.644  86.267
SDEV:     .078    .051    .000    .106    .213
SERR:     .035    .023    .000    .047
%RSD:      .28     .33     .00     .25
STDS:       73      73     ---     ---

STKF:    .2305   .1076     ---     ---
STCT:   448.80  238.86     ---     ---

UNKF:    .2303   .1078     ---     ---
UNCT:   448.33  239.45     ---     ---
UNBG:     1.83    1.54     ---     ---

ZCOR:   1.2268  1.4258     ---     ---
KRAW:    .9990  1.0025     ---     ---
PKBG:   245.93  156.66     ---     ---

And here is with the fluorine included:

Un    2 Topaz, Results in Elemental Weight Percents
 
ELEM:       Al      Si       F       O
TYPE:     ANAL    ANAL    STOI    CALC
BGDS:      LIN     LIN
TIME:    20.00   20.00     ---     ---
BEAM:    15.18   15.18     ---     ---

ELEM:       Al      Si       F       O   SUM 
     6  29.308  15.258  20.647  34.758  99.970
     7  29.312  15.247  20.645  34.750  99.954
     8  29.176  15.304  20.641  34.696  99.817
     9  29.393  15.376  20.675  34.957 100.401
    10  29.262  15.288  20.647  34.752  99.948

AVER:   29.290  15.294  20.651  34.783 100.018
SDEV:     .080    .051    .014    .101    .223
SERR:     .036    .023    .006    .045
%RSD:      .27     .33     .07     .29
STDS:       73      73     ---     ---

STKF:    .2305   .1076     ---     ---
STCT:   448.80  238.86     ---     ---

UNKF:    .2303   .1078     ---     ---
UNCT:   448.33  239.45     ---     ---
UNBG:     1.83    1.54     ---     ---

ZCOR:   1.2720  1.4184     ---     ---
KRAW:    .9990  1.0025     ---     ---
PKBG:   245.93  156.66     ---     ---

Note that the Al concentration changes by around 1 wt% *absolute* or over 3% relative!

And if we don't specify the oxygen-halogen correction to remove the excess stoichiometric oxygen from the matrix iteration, not only is our total way too high but look at the effect on the Al concentration from including that excess oxygen:

Un    2 Topaz, Results in Elemental Weight Percents
 
ELEM:       Al      Si       F       O
TYPE:     ANAL    ANAL    STOI    CALC
BGDS:      LIN     LIN
TIME:    20.00   20.00     ---     ---
BEAM:    15.18   15.18     ---     ---

ELEM:       Al      Si       F       O   SUM 
     6  29.819  15.136  23.211  43.768 111.934
     7  29.823  15.125  23.210  43.760 111.918
     8  29.685  15.182  23.209  43.702 111.778
     9  29.904  15.254  23.233  43.979 112.369
    10  29.772  15.166  23.212  43.761 111.911

AVER:   29.801  15.173  23.215  43.794 111.982
SDEV:     .080    .051    .010    .106    .225
SERR:     .036    .023    .004    .048
%RSD:      .27     .34     .04     .24
STDS:       73      73     ---     ---

STKF:    .2305   .1076     ---     ---
STCT:   448.80  238.86     ---     ---

UNKF:    .2303   .1078     ---     ---
UNCT:   448.33  239.45     ---     ---
UNBG:     1.83    1.54     ---     ---

ZCOR:   1.2942  1.4071     ---     ---
KRAW:    .9990  1.0025     ---     ---
PKBG:   245.93  156.66     ---     ---

Bottom line: whether the element is missing or in excess, it needs to be dealt with the the matrix iteration for accurate results!
« Last Edit: August 29, 2021, 12:00:12 PM by Probeman »
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