Hi John, many thanks for the quick reply - what you're suggesting with adding at least the beam current option to that flag should be perfect for what I'm trying to do.
I guess if it would set all of the options of the "digitized conditions", i.e. including things like image shift that then would be completely flexible and the name of the flag could be changed from "Use Sample Mag keV for Automated Imaging" to "Use Digitized Conditions for Automated Imaging"? Not sure how much more work that would be compared to just adding the beam current, but it might make that flag more useful in general?