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41
Cameca / SX100 stage hardware problem
« Last post by Utah-Wil on August 05, 2024, 02:25:19 PM »
Hello,  I apologize if this has been discussed previously, though I've not found it if it has. 

I'm having a problem with my stage where I feel that the position signal on the X and Y axis needs adjustment.  There is an oscillation at the end of a travel where it seems like the stage is confused on it's actual position.  The stage tests and initializes without issue.  Does anybody have experience with testing and adjusting the encoder/decoder signal using an O-scope and if so can you please send any tips and tricks my way.

Thank you!
wil
42
Probe for EPMA / Re: Basic EPMA
« Last post by John Donovan on August 05, 2024, 11:18:52 AM »
Just wanted to share the good news that we (thanks to Mike Matthews and Scott Boroughs!) have completed all the video tutorials for the Basic EPMA window in Probe for EPMA:



Remember, this "floating" window is available from the File menu in Probe for EPMA and provides an easy to navigate set of buttons, Help file links and now video tutorials for those learning the software.

Of course you can all these videos plus many more on our Probe Software YouTube channel:

https://www.youtube.com/@ProbeSoftware

If you have any suggestions for improving this feature please let us know...
43
CalcImage / Re: New Features in CalcImage
« Last post by John Donovan on August 04, 2024, 01:23:21 PM »
This isn't so much a new feature as a fix for something that wasn't quite right.

Maybe some of you have noticed, but as Paul Carpenter pointed out to me recently that the "Totals" column in some of the GUI windows and the "Classify" output .DAT files was not always the last column.  This sometimes occurred when unanalyzed elements were added to the project. This was an oversight and has now been fixed:



In addition the "Classify" DAT file used to have a trailing tab on each line which might caused an issue when reading the DAT file in other applications. This has also been fixed.
44
Remote Server / Re: Using Deadtime.xls to measure JEOL WDS detector dead times
« Last post by Probeman on August 04, 2024, 07:49:28 AM »
I would just like to point out that although the Remote server is very useful for creating custom applications for your JEOL or Cameca instrument, for example see the sample Excel spreadsheets in the Remote.msi installer, e.g.,

TestRemote.xls              - simple example of how to connect, and control your microprobe from Excel
TestReproduce.xls         - example of calls to test the spectrometer reproducibility on your microprobe
TestStability.xls              - example of calls to test your instrument stability over time
TestColumn.xls              - example to control the column functions on your microprobe

The above Excel files will probably need to be changed to Excel "macro" files with the extension .xlsm because the Remote interface utilizes the macro feature in Excel.  You can get started writing your own Excel macros to control your microprobe instrument by downloading the Remote server installer Remote.msi here:

https://probesoftware.com/smf/index.php?topic=88.msg315#msg315

One can also develop custom image acquisition applications as described here:

https://probesoftware.com/smf/index.php?topic=754.0

Finally I should note (the purpose of this post is), that although there is also a Deadtime_Acquire.xlsm Excel macro file that can be used to calibrate one's dead time constants, which utilizes the Deadtime_Calc.xlsx Excel spreadsheet designed by Paul Carpenter, I no longer recommend the use of these spreadsheets for the calibration of dead times on EPMA instruments.

The reason is that we now have a much more accurate dead time method which can handle the non-linear response of our counting electronics at much higher count rates as described here in this topic:

https://probesoftware.com/smf/index.php?topic=1466.msg11102#msg11102

This new logarithmic dead time method published last year in Microscopy & Microanalysis allows one to exceed the linear response model that previously limited us to ~50 kcps and allows one to obtain stable count rates to ~300 to 400 kcps using the new constant k-ratio method as shown in our M&M paper

https://academic.oup.com/mam/article-abstract/29/3/1096/7165464

If you do not have Probe for EPMA, the link above describes how to acquire the intensity data for this new dead time calibration, but if you do have Probe for EPMA, this new dead time calibration is very easy and fully automated, as described in the pdf file available from the Help menu in Probe for EPMA:

45
Remote Server / Re: Remote Server Error
« Last post by John Donovan on August 03, 2024, 08:25:01 AM »
Update:  I got it working. I didn't see that you had to first go to the Remote.exe in  "C:\Program Files (x86)\Common Files\Probe Software\remote.exe" and set to run on SP3 and Run as Administrator. I had changed the setting for the "C:\Program Files (x86)\Probe Software\Remote\TestRemote.exe".  Anyway, after changing those settings the Remote.exe opens after ~30 seconds.  I was then able to change the settings back to normal and the Remote.exe still worked.

Thanks!

What Ryan says here is correct with some of the newer Windows operating systems.  But there's actually an easier method now where one only needs to right click TestRemote.exe and click the Run as Administrator menu the FIRST time you run it (no messing with the Compatibility tab). But a new wrinkle recently showed up...

It used to be that when we right clicked the TestRemote.exe app and selected Run as Administrator, this automatically registered the Remote.exe app object with the OS.  But it seems that Microsoft has locked things further down recently and one may see on a Win11 computer "Class not registered for TestRemoteLoadRemoteObject" and on a Win7 computer "Active X component can't create object" even after doing the "run as admin" right click to TestRemote.exe. 

Therefore when these errors are seen starting TestRemote.exe it will be necessary to use the same trick on the Remote.exe server and select the Run as Administrator menu. The Remote.exe server is found in the C:\Program Files (x86)\Command Files\Probe Software folder. Thanks to Paul Carpenter and Owen Neill for working with us on this issue.

Note also that this is the same folder that one must copy the JEOL EIKS files to, for JEOL 8x30 and iHP200F instruments. These files are:

eiksJSample.exe
jeoleiks.dll
JeolEIKS.ini
mfc100.dll
msvcr100.dll

Remember, these need to be copied from the Probe for EPMA application folder (usually C:\Program Files (x86)\Probe Software\Probe for EPMA) to the Remote.exe application folder (usually C:\Program Files (x86)\Common Files\Probe Software.
46
EPMA Equipment and Parts / Jeol 733 for parts
« Last post by milen on August 01, 2024, 11:51:09 AM »
Decommissioned in early 2000 from Syracuse Uni. Kept in climate controlled storage under vacuum in Nashua NH. If interested contact mshishkov@gmail.com
47
Discussion of General EPMA Issues / Re: Measuring O (or C or N)
« Last post by John Donovan on July 31, 2024, 10:23:09 PM »
Here is the pdf file of the low Z elements presentation I gave today (which got about 80% of the way through). See attached below- remember to login to see attachments.

An extended presentation of this topic is found on our Probe Software YouTube channel here:

https://www.youtube.com/watch?v=wrxPaZdK-Rg

This video presentation includes worked examples for the use of empirical mass absorption coefficients (MACs), area peak factors (APFs), interference corrections and time dependent intensity (TDI) corrections for beam sensitive samples.
48
Discussion of General EPMA Issues / Isotopes and quantitative microanaysis
« Last post by John Donovan on July 31, 2024, 04:49:13 AM »
I've decided it might be worth starting a new topic on this question because it's not completely intuitive how isotopes (atomic mass) are involved with our matrix correction procedures.  This will be a short post to start with but let's see how much interest there is.

To begin I noticed that Andrew Locock mentioned editing the atomic weight for carbon from 12.011 to 12.0107 in the Elements/Cations window and Probeman teased him a bit about that (though maybe Andrew had a good reason for making that change?).  After all as Probeman pointed out, the C13 ratios in diamond can vary considerably:

https://probesoftware.com/smf/index.php?topic=71.msg12766#msg12766

Now Andrew was only able to make such a change because Probe for EPMA recently (last summer) enabled one to edit the atomic masses from the GUI in both the Standard application (for standard compositions) and for unknowns (in Probe for EPMA) as described here:

https://probesoftware.com/smf/index.php?topic=40.msg12014#msg12014

but what effect does changing the atomic weights have in our quantitative matrix corrections? Well ideally it should have no effect as mass effects are essentially unobservarble at typical electron beam energies:

https://www.cambridge.org/core/journals/microscopy-and-microanalysis/article/abs/compositional-averaging-of-backscatter-intensities-in-compounds/0E233FBBB78BC96E8C14977DBC2B556B

and in fact in the absorption correction we normalize out mass effects by utilizing mass fractions with mass absorption coefficients and in the energy loss correction by utilizing mass fractions with mass thicknesses.  Though as noted in the paper above, backscatter corrections (and continuum productions) are not always handled appropriately (it's simply electrodynamics all the way down!).

In other words mass effects should normalized out in the absorption and energy loss corrections, and for backscatter corrections we should utilize Z based fractions (i.e., the Z fraction method described in our paper) for compounds. In fact this is how Davis Stowe at Gatan was able to get their "quantitative backscatter" method for determining lithium concentrations to work:

Stowe, Davd, et al. "Assessing the Accuracy of Lithium Contents Determined by Combined Quantitative Backscattered Electron and X-ray Energy Dispersive Spectroscopy Analysis." (2024): ozae044-085.

All that said, what effect does changing the atomic weights have on our quant results? Well assuming the standard and the unknown are both utilizing the same atomic weights, it should have no effect on the matrix corrections, but of course the reported mass concentrations will change.  That is to say that SiO2 with Si29 will have different mass concentrations than SiO2 with Si28.
49
Probe for EPMA / Re: Wish List for PFE Features
« Last post by Probeman on July 30, 2024, 05:25:55 PM »
Thanks very much for the tip - in the same window I then adjusted the molar mass to 12.0107.

What?  12.011 wasn't close enough for you?

;D

Here's something interesting...

Quote
The carbon isotopic composition of diamonds: relationship to diamond shape, color, occurrence and vapor composition
Peter Deines

Abstract

Three hundred and thirty new 13C analyses of diamonds are presented, indicating, in conjunction with earlier published work, a range of about 30%. in the carbon isotopic composition of diamonds. The frequency distribution of diamond δ13C analyses shows a very pronounced mode at −5 to −6%.vs PDB, a large negative skewness, and a sharp boundary at about −1%.. Analyses of diamonds from the Premier and Dan Carl mines, South Africa, demonstrate that: (1) differences in 13C content that can be related to diamond color and shape are smaller than 1%.; (2) the mean 13C content of kimberlite carbonates is 1–2%. lower than that of associated diamonds; (3) significant differences in 13C content exist between the mean isotopic compositions of diamonds from these two pipes; (4) the variability in δ13C differs from one mine to the other.

https://www.sciencedirect.com/science/article/abs/pii/0016703780902847

I guess I'm wondering how much these isotopic variations affect the carbon atomic weight in diamond?  Here's something else interesting:

https://physics.nist.gov/cgi-bin/Compositions/stand_alone.pl?ele=C
50
Probe for EPMA / Re: Wish List for PFE Features
« Last post by AndrewLocock on July 30, 2024, 07:14:47 AM »
Yes, that works perfectly!
Thanks very much for the tip - in the same window I then adjusted the molar mass to 12.0107.

Probe-for-EPMA is great software, made better by the excellent support.
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